- io500
-
#!/bin/bash
#
# INSTRUCTIONS:
# Edit this file as needed for your machine.
# This simplified version is just for running on a single node.
# It is a simplified version of the site-configs/sandia/startup.sh which include SLURM directives.
# Most of the variables set in here are needed for io500_fixed.sh which gets sourced at the end of this.
# Please also edit 'extra_description' function.
#set -x
if [ "$1" == "" ]
then
SCALE=1
else
SCALE=$1
fi
NP=$(( $SCALE * 16 ))
echo "$SCALE processes per node for $NP processes."
set -euo pipefail # better error handling
export OFS_MOUNT=/scratch1/jburto2
# turn these to True successively while you debug and tune this benchmark.
# for each one that you turn to true, go and edit the appropriate function.
# to find the function name, see the 'main' function.
# These are listed in the order that they run.
io500_run_ior_easy="True" # does the write phase and enables the subsequent read
io500_run_md_easy="True" # does the creat phase and enables the subsequent stat
io500_run_ior_hard="True" # does the write phase and enables the subsequent read
io500_run_md_hard="True" # does the creat phase and enables the subsequent read
io500_run_find="True"
io500_run_ior_easy_read="True"
io500_run_md_easy_stat="True"
io500_run_ior_hard_read="True"
io500_run_md_hard_stat="True"
io500_run_md_hard_read="True"
io500_run_md_easy_delete="True" # turn this off if you want to just run find by itself
io500_run_md_hard_delete="True" # turn this off if you want to just run find by itself
io500_run_mdreal="True" # this one is optional
io500_cleanup_workdir="False" # this flag is currently ignored. You'll need to clean up your data files manually if you want to.
io500_stonewall_timer=300 # Stonewalling timer, stop with wearout after 300s with default test, set to 0, if you never want to abort...
# to run this benchmark, find and edit each of these functions.
# please also edit 'extra_description' function to help us collect the required data.
function main {
setup_directories
setup_paths
setup_ior_easy # required if you want a complete score
setup_ior_hard # required if you want a complete score
setup_mdt_easy # required if you want a complete score
setup_mdt_hard # required if you want a complete score
setup_find # required if you want a complete score
setup_mdreal # optional
run_benchmarks
}
function setup_directories {
# set directories for where the benchmark files are created and where the results will go.
# If you want to set up stripe tuning on your output directories or anything similar, then this is good place to do it.
timestamp=`date +%Y.%m.%d-%H.%M.%S` # create a uniquifier
io500_workdir=$OFS_MOUNT/io500/datafiles/io500.$timestamp # directory where the data will be stored
io500_result_dir=$PWD/results/$timestamp # the directory where the output results will be kept
mkdir -p $io500_workdir $io500_result_dir
mkdir -p ${io500_workdir}/ior_easy ${io500_workdir}/ior_hard
mkdir -p ${io500_workdir}/mdt_easy ${io500_workdir}/mdt_hard
# for ior_easy 1 targets. RAID stripe is 8 x 256k = 2048k
# beegfs-ctl --setpattern --numtargets=1 --chunksize=2048k --mount=/scratch4 ${io500_workdir}/ior_easy
# stripe across all OSTs for ior_hard, 64k chunksize
# best pattern is minimal chunksize to fit one I/O in, regardless of RAID stripe.
# beegfs-ctl --setpattern --numtargets=6 --chunksize=64k --mount=/scratch4 ${io500_workdir}/ior_hard
# turn off striping and use small chunks for mdtest
# beegfs-ctl --setpattern --numtargets=1 --chunksize=64k --mount=/scratch4 ${io500_workdir}/mdt_easy
# beegfs-ctl --setpattern --numtargets=1 --chunksize=64k --mount=/scratch4 ${io500_workdir}/mdt_hard
}
function setup_paths {
# Set the paths to the binaries. If you ran ./utilities/prepare.sh successfully, then binaries are in ./bin/
io500_ior_cmd=$PWD/bin/ior
io500_mdtest_cmd=$PWD/bin/mdtest
io500_mdreal_cmd=$PWD/bin/md-real-io
io500_mpi_prefix="/usr/lib64/openmpi"
io500_mpi_prefix="/home/jburto2/openmpi/1.10.7"
io500_mpi_prefix="/software/openmpi/1.10.7_gcc"
io500_mpirun="$io500_mpi_prefix/bin/mpirun"
io500_mpienv="-x LD_LIBRARY_PATH=/opt/pbs/14.0.1-2cu/lib:/opt/orangefs/lib"
# Run OpenMPI over ethernet to keep the IB network clear for data. Map by node to balance processes.
# The I/O 500 benchmarks are not heavy on interprocess communication.
#io500_mpiargs="-np $NP --mca btl_tcp_if_exclude ib0 --mca btl ^openib --map-by node --machinefile /home/jburto2/hpccnodelistmpi --prefix $io500_mpi_prefix"
io500_mpiargs="-np $NP ${io500_mpienv} --mca mpi_cuda_support 0 --map-by node --machinefile /home/jburto2/phase08cmpi --prefix $io500_mpi_prefix"
}
function setup_ior_easy {
# 2M writes, 128 GB per proc, file per proc.
io500_ior_easy_size=$((128 * 1024 / $SCALE))
io500_ior_easy_params="-t 2m -b ${io500_ior_easy_size}m -F -a MPIIO"
}
function setup_mdt_easy {
# one level, 11 directories, unique dir per thread, files only at leaves.
# BeeGFS doesn't have distributed directories, so more directories = better distribution.
io500_mdtest_easy_params="-u -L"
io500_mdtest_easy_files_per_proc=800000
}
function setup_ior_hard {
if [ "$SCALE" == "1" ]
then
# One process per node is significantly faster because of buffering.
io500_ior_hard_writes_per_proc=2000000
else
io500_ior_hard_writes_per_proc=$(( 2000000 / $SCALE ))
fi
io500_ior_hard_other_options=" -a MPIIO"
}
function setup_mdt_hard {
# Multiple directories might improve mdt_hard slightly, but this test is storage bound, not md bound.
io500_mdtest_hard_files_per_proc="$(( 150000 / $SCALE ))"
io500_mdtest_files_per_proc=$(( 150000 / $SCALE ))
io500_mdtest_hard_other_options=""
}
function setup_find {
#
# setup the find command. This is an area where innovation is allowed.
# There are three default options provided. One is a serial find, one is python
# parallel version, one is C parallel version. Current default is to use serial.
# But it is very slow. We recommend to either customize or use the C parallel version.
# For GPFS, we recommend to use the provided mmfind wrapper described below.
# Instructions below.
# If a custom approach is used, please provide enough info so others can reproduce.
# the serial version that should run (SLOWLY) without modification
#io500_find_mpi="False"
#io500_find_cmd=$PWD/bin/sfind.sh
#io500_find_cmd_args=""
# a parallel version in C, the -s adds a stonewall
# for a real run, turn -s (stonewall) off or set it at 300 or more
# to prepare this (assuming you've run ./utilities/prepare.sh already):
# > cd build/pfind
# > ./prepare.sh
# > ./compile.sh
# > cp pfind ../../bin/
# If you use io500_find_mpi="True", then this will run with the same
# number of MPI nodes and ranks as the other phases.
# If you prefer another number, and fewer might be better here,
# Then you can set io500_find_mpi to be "False" and write a wrapper
# script for this which sets up MPI as you would like. Then change
# io500_find_cmd to point to your wrapper script.
io500_find_mpi="True"
io500_find_cmd="$PWD/bin/pfind"
io500_find_cmd_args="-s 10000 -r $io500_result_dir/pfind_results"
# for GPFS systems, you should probably use the provided mmfind wrapper
# if you used ./utilities/prepare.sh, you'll find this wrapper in ./bin/mmfind.sh
#io500_find_mpi="False"
#io500_find_cmd="$PWD/bin/mmfind.sh"
#io500_find_cmd_args=""
}
function setup_mdreal {
io500_mdreal_params="-P=5000 -I=1000"
}
function run_benchmarks {
# Important: source the io500_fixed.sh script. Do not change it. If you discover
# a need to change it, please email the mailing list to discuss
source ./bin/io500_fixed.sh 2>&1 | tee $io500_result_dir/io-500-summary.$timestamp.txt
}
# Add key/value pairs defining your system
# Feel free to add extra ones if you'd like
function extra_description {
# top level info
io500_info_system_name='Palmetto scratch1' # e.g. Oakforest-PACS
io500_info_institute_name='Clemson University' # e.g. JCAHPC
io500_info_storage_age_in_months='0' # not install date but age since last refresh
io500_info_storage_install_date='07/18' # MM/YY
io500_info_filesysem='OrangeFS' # e.g. BeeGFS, DataWarp, GPFS, IME, Lustre
io500_info_filesystem_version='2.9.7'
# client side info
io500_info_num_client_nodes='16'
io500_info_procs_per_node="${SCALE}"
# server side info
io500_info_num_metadata_server_nodes='16'
io500_info_num_data_server_nodes='16'
io500_info_num_data_storage_devices='32' # if you have 5 data servers, and each has 5 drives, then this number is 25
io500_info_num_metadata_storage_devices='128' # if you have 2 metadata servers, and each has 5 drives, then this number is 10
io500_info_data_storage_type='HDD' # HDD, SSD, persistent memory, etc, feel free to put specific models
io500_info_metadata_storage_type='SSD' # HDD, SSD, persistent memory, etc, feel free to put specific models
io500_info_storage_network='ethernet' # infiniband, omnipath, ethernet, etc
io500_info_storage_interface='SAS' # SAS, SATA, NVMe, etc
# miscellaneous
io500_info_whatever='production'
}
main
- ior_easy_read
-
[node0046.palmetto.clemson.edu:78470] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:09443] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:01867] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:12505] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:54539] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:122732] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:69996] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:108399] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:02472] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:44629] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:77178] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:112297] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:112376] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:47174] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:20151] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:57139] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:32609] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:83731] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:114747] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:98348] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:114188] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:37317] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:43064] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:47680] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:93116] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:68104] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:114262] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:41213] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:113097] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:39765] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:65190] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:03249] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
IOR-3.2.0: MPI Coordinated Test of Parallel I/O
Began : Mon Oct 22 12:53:07 2018
Command line : /home/jburto2/io-500-dev/bin/ior -r -R -C -Q 1 -g -G 27 -k -e -t 2m -b 65536m -F -a MPIIO -o /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_easy/ior_file_easy -O stoneWallingStatusFile=/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_easy/stonewall
Machine : Linux node0046.palmetto.clemson.edu
TestID : 0
StartTime : Mon Oct 22 12:53:07 2018
Path : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_easy
FS : 232.8 TiB Used FS: 19.3% Inodes: 0.0 Mi Used Inodes: -nan%
Options:
api : MPIIO
apiVersion : (3.0)
test filename : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_easy/ior_file_easy
access : file-per-process
type : independent
segments : 1
ordering in a file : sequential
ordering inter file : constant task offset
task offset : 1
tasks : 32
clients per node : 1
repetitions : 1
xfersize : 2 MiB
blocksize : 64 GiB
aggregate filesize : 2 TiB
Results:
access bw(MiB/s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---------- --------- -------- -------- -------- -------- ----
WARNING: Expected aggregate file size = 2199023255552.
WARNING: Stat() of aggregate file size = 1518002503680.
WARNING: Using actual aggregate bytes moved = 1518002503680.
read 4612 67108864 2048.00 0.009393 313.85 0.005121 313.86 0
Max Read: 4612.49 MiB/sec (4836.55 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
read 4612.49 4612.49 4612.49 0.00 2306.24 2306.24 2306.24 0.00 313.86091 0 32 1 1 1 1 1 0 0 1 68719476736 2097152 1447680.0 MPIIO 0
Finished : Mon Oct 22 12:58:21 2018
- ior_easy_write
-
[node1808.palmetto.clemson.edu:121855] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:77521] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:64322] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:111415] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:53580] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:40332] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:42189] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:46204] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:113864] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:43754] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:31640] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:69032] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:36453] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:08556] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:19271] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:02368] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:56204] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:01491] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:00993] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:76312] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:107515] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:11641] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:113397] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:113226] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:67223] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:46808] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:92161] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:111513] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:38898] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:97478] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:82865] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:112226] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
IOR-3.2.0: MPI Coordinated Test of Parallel I/O
Began : Mon Oct 22 12:05:57 2018
Command line : /home/jburto2/io-500-dev/bin/ior -w -C -Q 1 -g -G 27 -k -e -t 2m -b 65536m -F -a MPIIO -o /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_easy/ior_file_easy -O stoneWallingStatusFile=/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_easy/stonewall -O stoneWallingWearOut=1 -D 300
Machine : Linux node0046.palmetto.clemson.edu
TestID : 0
StartTime : Mon Oct 22 12:05:57 2018
Path : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_easy
FS : 232.8 TiB Used FS: 18.1% Inodes: 0.0 Mi Used Inodes: -nan%
Options:
api : MPIIO
apiVersion : (3.0)
test filename : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_easy/ior_file_easy
access : file-per-process
type : independent
segments : 1
ordering in a file : sequential
ordering inter file : constant task offset
task offset : 1
tasks : 32
clients per node : 1
repetitions : 1
xfersize : 2 MiB
blocksize : 64 GiB
aggregate filesize : 2 TiB
stonewallingTime : 300
stoneWallingWearOut : 1
Results:
access bw(MiB/s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---------- --------- -------- -------- -------- -------- ----
stonewalling pairs accessed min: 21940 max: 22620 -- min data: 42.9 GiB mean data: 43.2 GiB time: 300.0s
WARNING: Expected aggregate file size = 2199023255552.
WARNING: Stat() of aggregate file size = 1518002503680.
WARNING: Using actual aggregate bytes moved = 1518002503680.
WARNING: maybe caused by deadlineForStonewalling
write 4484 67108864 2048.00 0.008963 322.82 0.005227 322.83 0
Max Write: 4484.28 MiB/sec (4702.11 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
write 4484.28 4484.28 4484.28 0.00 2242.14 2242.14 2242.14 0.00 322.83419 0 32 1 1 1 1 1 0 0 1 68719476736 2097152 1447680.0 MPIIO 0
Finished : Mon Oct 22 12:11:20 2018
- ior_hard_read
-
[node1113.palmetto.clemson.edu:02126] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:54813] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:57390] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:112554] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:12756] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:00422] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:32883] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:02726] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:70262] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:09701] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:47449] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:108662] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:78749] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:114451] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:43318] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:115005] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:44881] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:03503] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:20407] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:37569] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:41470] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:93377] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:114513] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:77428] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:47932] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:113347] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:65438] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:112628] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:98599] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:40015] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:68356] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:83978] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
IOR-3.2.0: MPI Coordinated Test of Parallel I/O
Began : Mon Oct 22 13:02:03 2018
Command line : /home/jburto2/io-500-dev/bin/ior -r -R -C -Q 1 -g -G 27 -k -e -t 47008 -b 47008 -s 1000000 -a POSIX -o /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_hard/IOR_file -O stoneWallingStatusFile=/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_hard/stonewall
Machine : Linux node0046.palmetto.clemson.edu
TestID : 0
StartTime : Mon Oct 22 13:02:03 2018
Path : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_hard
FS : 232.8 TiB Used FS: 19.3% Inodes: 0.0 Mi Used Inodes: -nan%
Options:
api : POSIX
apiVersion :
test filename : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_hard/IOR_file
access : single-shared-file
type : independent
segments : 1000000
ordering in a file : sequential
ordering inter file : constant task offset
task offset : 1
tasks : 32
clients per node : 1
repetitions : 1
xfersize : 47008 bytes
blocksize : 47008 bytes
aggregate filesize : 1.37 TiB
Results:
access bw(MiB/s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---------- --------- -------- -------- -------- -------- ----
WARNING: Expected aggregate file size = 1504256000000.
WARNING: Stat() of aggregate file size = 1452243340288.
WARNING: Using actual aggregate bytes moved = 1452243340288.
read 988.19 45.91 45.91 0.009830 1401.50 0.013474 1401.51 0
Max Read: 988.19 MiB/sec (1036.20 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
read 988.19 988.19 988.19 0.00 22042.96 22042.96 22042.96 0.00 1401.51484 0 32 1 1 0 1 1 0 0 1000000 47008 47008 1384967.1 POSIX 0
Finished : Mon Oct 22 13:25:24 2018
- ior_hard_write
-
[node1810.palmetto.clemson.edu:107713] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:77744] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:08755] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:42384] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:46427] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:69245] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:122050] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:01184] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:39088] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:76502] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:19467] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:01690] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:31863] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:02558] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:43946] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:36644] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:53794] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:11830] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:111706] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:113586] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:111615] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:56396] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:92380] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:40528] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:83055] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:114060] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:64515] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:112418] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:113442] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:97670] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:47003] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:67422] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
IOR-3.2.0: MPI Coordinated Test of Parallel I/O
Began : Mon Oct 22 12:17:42 2018
Command line : /home/jburto2/io-500-dev/bin/ior -w -C -Q 1 -g -G 27 -k -e -t 47008 -b 47008 -s 1000000 -a POSIX -o /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_hard/IOR_file -O stoneWallingStatusFile=/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_hard/stonewall -O stoneWallingWearOut=1 -D 300
Machine : Linux node0046.palmetto.clemson.edu
TestID : 0
StartTime : Mon Oct 22 12:17:42 2018
Path : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_hard
FS : 232.8 TiB Used FS: 18.7% Inodes: 0.0 Mi Used Inodes: -nan%
Options:
api : POSIX
apiVersion :
test filename : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/ior_hard/IOR_file
access : single-shared-file
type : independent
segments : 1000000
ordering in a file : sequential
ordering inter file : constant task offset
task offset : 1
tasks : 32
clients per node : 1
repetitions : 1
xfersize : 47008 bytes
blocksize : 47008 bytes
aggregate filesize : 1.37 TiB
stonewallingTime : 300
stoneWallingWearOut : 1
Results:
access bw(MiB/s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---------- --------- -------- -------- -------- -------- ----
stonewalling pairs accessed min: 965413 max: 965423 -- min data: 42.3 GiB mean data: 42.3 GiB time: 300.0s
WARNING: Expected aggregate file size = 1504256000000.
WARNING: Stat() of aggregate file size = 1452243340288.
WARNING: Using actual aggregate bytes moved = 1452243340288.
WARNING: maybe caused by deadlineForStonewalling
write 4063 45.91 45.91 0.011593 340.87 0.008525 340.89 0
Max Write: 4062.80 MiB/sec (4260.16 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
write 4062.80 4062.80 4062.80 0.00 90626.18 90626.18 90626.18 0.00 340.88975 0 32 1 1 0 1 1 0 0 1000000 47008 47008 1384967.1 POSIX 0
Finished : Mon Oct 22 12:23:23 2018
- mdtest_easy_delete
-
[node0046.palmetto.clemson.edu:79141] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:00795] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:02495] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:57750] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:13118] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:112921] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:10067] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:37925] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:33247] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:77788] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:03836] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:40377] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:45241] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:70674] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:47856] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:108997] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:43684] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:20772] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:114901] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:55188] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:114858] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:115371] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:112950] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:113711] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:03100] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:65802] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:84307] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:48293] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:93780] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:98923] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:41836] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:68718] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 13:26:28 --
mdtest-1.9.3 was launched with 32 total task(s) on 32 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-r" "-F" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_easy" "-n" "800000" "-u" "-L" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_easy-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50
FS: 232.8 TiB Used FS: 19.3% Inodes: 0.0 Mi Used Inodes: -nan%
32 tasks, 25600000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 41548.527 41548.527 41548.527 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 0.387 0.387 0.387 0.000
-- finished at 10/22/2018 13:31:30 --
- mdtest_easy_stat
-
[node0046.palmetto.clemson.edu:78575] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:112386] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:12593] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:54635] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:32708] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:09534] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:122824] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:77264] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:57228] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:114837] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:93214] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:112431] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:47275] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:39853] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:114288] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:70095] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:37405] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:43152] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:03304] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:41303] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:108455] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:01955] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:47770] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:02562] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:114350] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:20240] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:65278] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:44717] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:83818] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:68195] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:113186] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:98402] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 12:58:38 --
mdtest-1.9.3 was launched with 32 total task(s) on 32 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-T" "-F" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_easy" "-n" "800000" "-u" "-L" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_easy-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50
FS: 232.8 TiB Used FS: 19.3% Inodes: 0.0 Mi Used Inodes: -nan%
32 tasks, 25600000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 61013.164 61013.164 61013.164 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 13:02:01 --
- mdtest_easy_write
-
[node0121.palmetto.clemson.edu:111598] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:77718] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:42368] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:11818] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:31795] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:36629] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:01171] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:56384] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:122034] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:111658] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:19451] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:113418] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:08738] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:53735] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:46402] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:69221] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:107662] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:114045] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:02511] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:01673] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:97623] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:92351] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:43932] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:113574] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:40513] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:67401] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:76489] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:39075] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:112404] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:46989] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:64502] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:83043] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 12:11:39 --
mdtest-1.9.3 was launched with 32 total task(s) on 32 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-C" "-F" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_easy" "-n" "800000" "-u" "-L" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_easy-stonewall" "-W" "300"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50
FS: 232.8 TiB Used FS: 18.7% Inodes: 0.0 Mi Used Inodes: -nan%
32 tasks, 25600000 files
stonewall rank 2: 378012 of 387630
stonewall rank 1: 355817 of 387630
stonewall rank 17: 356994 of 387630
Continue stonewall hit min: 349374 max: 387630 avg: 370335.5
stonewall rank 0: 354854 of 387630
stonewall rank 18: 383721 of 387630
stonewall rank 3: 365371 of 387630
stonewall rank 16: 371032 of 387630
stonewall rank 10: 363997 of 387630
stonewall rank 5: 386149 of 387630
stonewall rank 6: 380454 of 387630
stonewall rank 20: 349374 of 387630
stonewall rank 9: 378147 of 387630
stonewall rank 8: 364345 of 387630
stonewall rank 12: 360706 of 387630
stonewall rank 21: 358511 of 387630
stonewall rank 24: 366137 of 387630
stonewall rank 22: 353874 of 387630
stonewall rank 14: 367997 of 387630
stonewall rank 28: 375596 of 387630
stonewall rank 19: 373691 of 387630
stonewall rank 30: 368718 of 387630
stonewall rank 13: 371165 of 387630
stonewall rank 26: 387429 of 387630
stonewall rank 7: 375973 of 387630
stonewall rank 25: 379900 of 387630
stonewall rank 29: 386126 of 387630
stonewall rank 11: 377339 of 387630
stonewall rank 23: 368437 of 387630
stonewall rank 27: 376822 of 387630
stonewall rank 15: 370932 of 387630
stonewall rank 31: 355487 of 387630
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 76639.825 76639.825 76639.825 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 60.528 60.528 60.528 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 12:17:13 --
- mdtest_hard_delete
-
[node0046.palmetto.clemson.edu:79360] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:33500] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:113125] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:00995] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:02695] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:13312] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:10272] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:70896] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:55430] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:38121] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:109226] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:48069] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:42034] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:45436] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:20971] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:43883] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:04068] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:113906] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:113181] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:99151] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:115572] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:93995] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:03307] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:48490] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:77982] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:115071] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:57951] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:40573] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:66060] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:84539] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:68914] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:115131] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 13:33:18 --
mdtest-1.9.3 was launched with 32 total task(s) on 32 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-r" "-t" "-F" "-w" "3901" "-e" "3901" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_hard" "-n" "75000" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_hard-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50
FS: 232.8 TiB Used FS: 19.3% Inodes: 0.0 Mi Used Inodes: -nan%
32 tasks, 2400000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 5335.244 5335.244 5335.244 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 1.024 1.024 1.024 0.000
-- finished at 10/22/2018 13:36:05 --
- mdtest_hard_read
-
[node0046.palmetto.clemson.edu:79337] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:10254] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:13300] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:55416] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:38110] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:00981] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:20958] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:40561] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:113105] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:45424] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:33485] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:04056] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:115557] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:57939] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:48051] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:03295] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:93973] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:109213] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:115050] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:77971] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:113169] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:42020] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:02680] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:66047] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:43867] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:70870] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:99140] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:84526] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:68903] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:113894] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:115118] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:48478] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 13:31:46 --
mdtest-1.9.3 was launched with 32 total task(s) on 32 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-E" "-t" "-F" "-w" "3901" "-e" "3901" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_hard" "-n" "75000" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_hard-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50
FS: 232.8 TiB Used FS: 19.3% Inodes: 0.0 Mi Used Inodes: -nan%
32 tasks, 2400000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 9886.991 9886.991 9886.991 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 13:33:16 --
- mdtest_hard_stat
-
[node0046.palmetto.clemson.edu:79118] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:00748] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:47833] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:55173] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:13104] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:77776] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:33232] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:112870] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:02449] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:10017] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:57704] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:43669] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:03053] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:37880] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:20759] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:114843] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:108982] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:70659] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:115358] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:84296] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:40366] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:98909] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:41822] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:45196] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:113697] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:93733] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:114889] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:03824] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:112938] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:48282] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:68706] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:65788] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 13:25:44 --
mdtest-1.9.3 was launched with 32 total task(s) on 32 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-T" "-t" "-F" "-w" "3901" "-e" "3901" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_hard" "-n" "75000" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_hard-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50
FS: 232.8 TiB Used FS: 19.3% Inodes: 0.0 Mi Used Inodes: -nan%
32 tasks, 2400000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 20606.234 20606.234 20606.234 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 13:26:27 --
- mdtest_hard_write
-
[node0139.palmetto.clemson.edu:08903] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:77907] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:53953] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:107858] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1814.palmetto.clemson.edu:56540] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1868.palmetto.clemson.edu:11974] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:122195] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:111760] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:46584] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1870.palmetto.clemson.edu:76646] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:42528] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1869.palmetto.clemson.edu:113727] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1813.palmetto.clemson.edu:92534] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:32021] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1189.palmetto.clemson.edu:01839] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1816.palmetto.clemson.edu:02703] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1113.palmetto.clemson.edu:01331] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:114206] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:69409] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1812.palmetto.clemson.edu:36787] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1815.palmetto.clemson.edu:44092] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:19612] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:40675] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1872.palmetto.clemson.edu:39229] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:111849] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:113604] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1818.palmetto.clemson.edu:97815] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1873.palmetto.clemson.edu:112562] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:83198] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1819.palmetto.clemson.edu:64658] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1871.palmetto.clemson.edu:47148] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1820.palmetto.clemson.edu:67566] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 12:23:40 --
mdtest-1.9.3 was launched with 32 total task(s) on 32 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-C" "-t" "-F" "-w" "3901" "-e" "3901" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_hard" "-n" "75000" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50/mdt_hard-stonewall" "-W" "300"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-12.05.50
FS: 232.8 TiB Used FS: 19.3% Inodes: 0.0 Mi Used Inodes: -nan%
32 tasks, 2400000 files
Continue stonewall hit min: 27109 max: 27702 avg: 27324.2
stonewall rank 0: 27301 of 27702
stonewall rank 1: 27228 of 27702
stonewall rank 2: 27354 of 27702
stonewall rank 8: 27228 of 27702
stonewall rank 4: 27278 of 27702
stonewall rank 5: 27110 of 27702
stonewall rank 16: 27218 of 27702
stonewall rank 10: 27526 of 27702
stonewall rank 24: 27537 of 27702
stonewall rank 12: 27585 of 27702
stonewall rank 3: 27511 of 27702
stonewall rank 18: 27212 of 27702
stonewall rank 20: 27528 of 27702
stonewall rank 9: 27307 of 27702
stonewall rank 26: 27234 of 27702
stonewall rank 28: 27181 of 27702
stonewall rank 17: 27109 of 27702
stonewall rank 14: 27133 of 27702
stonewall rank 21: 27481 of 27702
stonewall rank 22: 27416 of 27702
stonewall rank 7: 27182 of 27702
stonewall rank 30: 27191 of 27702
stonewall rank 25: 27146 of 27702
stonewall rank 13: 27164 of 27702
stonewall rank 11: 27299 of 27702
stonewall rank 29: 27508 of 27702
stonewall rank 15: 27370 of 27702
stonewall rank 19: 27279 of 27702
stonewall rank 31: 27316 of 27702
stonewall rank 23: 27240 of 27702
stonewall rank 27: 27500 of 27702
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 7872.098 7872.098 7872.098 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 235.357 235.357 235.357 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 12:28:45 --
- result_summary
-
[RESULT] BW phase 1 ior_easy_write 4.379 GB/s : time 322.83 seconds
[RESULT] IOPS phase 1 mdtest_easy_write 76.640 kiops : time 356.54 seconds
[RESULT] BW phase 2 ior_hard_write 3.968 GB/s : time 340.89 seconds
[RESULT] IOPS phase 2 mdtest_hard_write 7.872 kiops : time 321.61 seconds
[RESULT] IOPS phase 3 find 9.090 kiops : time 1460.63 seconds
[RESULT] BW phase 3 ior_easy_read 4.504 GB/s : time 313.86 seconds
[RESULT] IOPS phase 4 mdtest_easy_stat 61.013 kiops : time 220.08 seconds
[RESULT] BW phase 4 ior_hard_read 0.965 GB/s : time 1401.51 seconds
[RESULT] IOPS phase 5 mdtest_hard_stat 20.606 kiops : time 56.52 seconds
[RESULT] IOPS phase 6 mdtest_easy_delete 41.549 kiops : time 302.63 seconds
[RESULT] IOPS phase 7 mdtest_hard_read 9.887 kiops : time 106.39 seconds
[RESULT] IOPS phase 8 mdtest_hard_delete 5.335 kiops : time 168.86 seconds
[SCORE] Bandwidth 2.94789 GB/s : IOPS 18.7246 kiops : TOTAL 7.42954