- io500
-
#!/bin/bash
#
# INSTRUCTIONS:
# Edit this file as needed for your machine.
# This simplified version is just for running on a single node.
# It is a simplified version of the site-configs/sandia/startup.sh which include SLURM directives.
# Most of the variables set in here are needed for io500_fixed.sh which gets sourced at the end of this.
# Please also edit 'extra_description' function.
#set -x
if [ "$1" == "" ]
then
SCALE=1
else
SCALE=$1
fi
NP=$(( $SCALE * 16 ))
echo "$SCALE processes per node for $NP processes."
set -euo pipefail # better error handling
export OFS_MOUNT=/scratch1b/jburto2
# turn these to True successively while you debug and tune this benchmark.
# for each one that you turn to true, go and edit the appropriate function.
# to find the function name, see the 'main' function.
# These are listed in the order that they run.
io500_run_ior_easy="True" # does the write phase and enables the subsequent read
io500_run_md_easy="True" # does the creat phase and enables the subsequent stat
io500_run_ior_hard="True" # does the write phase and enables the subsequent read
io500_run_md_hard="True" # does the creat phase and enables the subsequent read
io500_run_find="True"
io500_run_ior_easy_read="True"
io500_run_md_easy_stat="True"
io500_run_ior_hard_read="True"
io500_run_md_hard_stat="True"
io500_run_md_hard_read="True"
io500_run_md_easy_delete="True" # turn this off if you want to just run find by itself
io500_run_md_hard_delete="True" # turn this off if you want to just run find by itself
io500_run_mdreal="True" # this one is optional
io500_cleanup_workdir="False" # this flag is currently ignored. You'll need to clean up your data files manually if you want to.
io500_stonewall_timer=300 # Stonewalling timer, stop with wearout after 300s with default test, set to 0, if you never want to abort...
# to run this benchmark, find and edit each of these functions.
# please also edit 'extra_description' function to help us collect the required data.
function main {
setup_directories
setup_paths
setup_ior_easy # required if you want a complete score
setup_ior_hard # required if you want a complete score
setup_mdt_easy # required if you want a complete score
setup_mdt_hard # required if you want a complete score
setup_find # required if you want a complete score
setup_mdreal # optional
run_benchmarks
}
function setup_directories {
# set directories for where the benchmark files are created and where the results will go.
# If you want to set up stripe tuning on your output directories or anything similar, then this is good place to do it.
timestamp=`date +%Y.%m.%d-%H.%M.%S` # create a uniquifier
io500_workdir=$OFS_MOUNT/io500/datafiles/io500.$timestamp # directory where the data will be stored
io500_result_dir=$PWD/results/$timestamp # the directory where the output results will be kept
mkdir -p $io500_workdir $io500_result_dir
mkdir -p ${io500_workdir}/ior_easy ${io500_workdir}/ior_hard
mkdir -p ${io500_workdir}/mdt_easy ${io500_workdir}/mdt_hard
# for ior_easy 1 targets. RAID stripe is 8 x 64kk = 2048k
beegfs-ctl --setpattern --numtargets=1 --chunksize=2048k --mount=/scratch1b ${io500_workdir}/ior_easy
# stripe across all OSTs for ior_hard, 512k chunksize
beegfs-ctl --setpattern --numtargets=16 --chunksize=64k --mount=/scratch1b ${io500_workdir}/ior_hard
# turn off striping and use small chunks for mdtest
beegfs-ctl --setpattern --numtargets=1 --chunksize=64k --mount=/scratch1b ${io500_workdir}/mdt_easy
beegfs-ctl --setpattern --numtargets=1 --chunksize=64k --mount=/scratch1b ${io500_workdir}/mdt_hard
}
function setup_paths {
# Set the paths to the binaries. If you ran ./utilities/prepare.sh successfully, then binaries are in ./bin/
io500_ior_cmd=$PWD/bin/ior
io500_mdtest_cmd=$PWD/bin/mdtest
io500_mdreal_cmd=$PWD/bin/md-real-io
io500_mpi_prefix="/usr/lib64/openmpi"
io500_mpi_prefix="/home/jburto2/openmpi/1.10.7"
io500_mpi_prefix="/software/openmpi/1.10.7_gcc"
io500_mpirun="$io500_mpi_prefix/bin/mpirun"
io500_mpienv="-x LD_LIBRARY_PATH=/opt/pbs/14.0.1-2cu/lib:/opt/orangefs/lib"
# Run OpenMPI over ethernet to keep the IB network clear for data. Map by node to balance processes.
# The I/O 500 benchmarks are not heavy on interprocess communication.
#io500_mpiargs="-np $NP --mca btl_tcp_if_exclude ib0 --mca btl ^openib --map-by node --machinefile /home/jburto2/hpccnodelistmpi --prefix $io500_mpi_prefix"
io500_mpiargs="-np $NP ${io500_mpienv} --mca mpi_cuda_support 0 --map-by node --machinefile /home/jburto2/phase08cmpi --prefix $io500_mpi_prefix"
}
function setup_ior_easy {
# 2M writes, 128 GB per proc, file per proc.
io500_ior_easy_size=$((128 * 1024 / $SCALE))
io500_ior_easy_params="-t 2m -b ${io500_ior_easy_size}m -F -a MPIIO"
}
function setup_mdt_easy {
# one level, 11 directories, unique dir per thread, files only at leaves.
# BeeGFS doesn't have distributed directories, so more directories = better distribution.
io500_mdtest_easy_params="-u -L"
io500_mdtest_easy_files_per_proc=800000
}
function setup_ior_hard {
if [ "$SCALE" == "1" ]
then
# One process per node is significantly faster because of buffering.
io500_ior_hard_writes_per_proc=2000000
else
io500_ior_hard_writes_per_proc=$(( 2000000 / $SCALE ))
fi
io500_ior_hard_other_options=" -a POSIX"
}
function setup_mdt_hard {
# Multiple directories might improve mdt_hard slightly, but this test is storage bound, not md bound.
io500_mdtest_hard_files_per_proc="$(( 150000 / $SCALE ))"
io500_mdtest_files_per_proc=$(( 150000 / $SCALE ))
io500_mdtest_hard_other_options=""
}
function setup_find {
#
# setup the find command. This is an area where innovation is allowed.
# There are three default options provided. One is a serial find, one is python
# parallel version, one is C parallel version. Current default is to use serial.
# But it is very slow. We recommend to either customize or use the C parallel version.
# For GPFS, we recommend to use the provided mmfind wrapper described below.
# Instructions below.
# If a custom approach is used, please provide enough info so others can reproduce.
# the serial version that should run (SLOWLY) without modification
#io500_find_mpi="False"
#io500_find_cmd=$PWD/bin/sfind.sh
#io500_find_cmd_args=""
# a parallel version in C, the -s adds a stonewall
# for a real run, turn -s (stonewall) off or set it at 300 or more
# to prepare this (assuming you've run ./utilities/prepare.sh already):
# > cd build/pfind
# > ./prepare.sh
# > ./compile.sh
# > cp pfind ../../bin/
# If you use io500_find_mpi="True", then this will run with the same
# number of MPI nodes and ranks as the other phases.
# If you prefer another number, and fewer might be better here,
# Then you can set io500_find_mpi to be "False" and write a wrapper
# script for this which sets up MPI as you would like. Then change
# io500_find_cmd to point to your wrapper script.
io500_find_mpi="True"
io500_find_cmd="$PWD/bin/pfind"
io500_find_cmd_args="-s 10000 -r $io500_result_dir/pfind_results"
# for GPFS systems, you should probably use the provided mmfind wrapper
# if you used ./utilities/prepare.sh, you'll find this wrapper in ./bin/mmfind.sh
#io500_find_mpi="False"
#io500_find_cmd="$PWD/bin/mmfind.sh"
#io500_find_cmd_args=""
}
function setup_mdreal {
io500_mdreal_params="-P=5000 -I=1000"
}
function run_benchmarks {
# Important: source the io500_fixed.sh script. Do not change it. If you discover
# a need to change it, please email the mailing list to discuss
source ./bin/io500_fixed.sh 2>&1 | tee $io500_result_dir/io-500-summary.$timestamp.txt
}
# Add key/value pairs defining your system
# Feel free to add extra ones if you'd like
function extra_description {
# top level info
io500_info_system_name='Palmetto scratch1b' # e.g. Oakforest-PACS
io500_info_institute_name='Clemson University' # e.g. JCAHPC
io500_info_storage_age_in_months='0' # not install date but age since last refresh
io500_info_storage_install_date='09/12' # MM/YY
io500_info_filesysem='BeeGFS' # e.g. BeeGFS, DataWarp, GPFS, IME, Lustre
io500_info_filesystem_version='7.1'
# client side info
io500_info_num_client_nodes='16'
io500_info_procs_per_node="${SCALE}"
# server side info
io500_info_num_metadata_server_nodes='16'
io500_info_num_data_server_nodes='16'
io500_info_num_data_storage_devices='32' # if you have 5 data servers, and each has 5 drives, then this number is 25
io500_info_num_metadata_storage_devices='160' # if you have 2 metadata servers, and each has 5 drives, then this number is 10
io500_info_data_storage_type='HDD' # HDD, SSD, persistent memory, etc, feel free to put specific models
io500_info_metadata_storage_type='SSD' # HDD, SSD, persistent memory, etc, feel free to put specific models
io500_info_storage_network='ethernet' # infiniband, omnipath, ethernet, etc
io500_info_storage_interface='SAS' # SAS, SATA, NVMe, etc
# miscellaneous
io500_info_whatever='production'
}
main
- ior_easy_read
-
[node0175.palmetto.clemson.edu:52415] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:76387] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:07538] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:120856] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:30511] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:106516] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:110407] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:67929] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:41192] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:18198] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:39317] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:112128] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:110531] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:45097] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:112887] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:81882] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
IOR-3.2.0: MPI Coordinated Test of Parallel I/O
Began : Mon Oct 22 11:10:14 2018
Command line : /home/jburto2/io-500-dev/bin/ior -r -R -C -Q 1 -g -G 27 -k -e -t 2m -b 131072m -F -a MPIIO -o /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_easy/ior_file_easy -O stoneWallingStatusFile=/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_easy/stonewall
Machine : Linux node0046.palmetto.clemson.edu
TestID : 0
StartTime : Mon Oct 22 11:10:14 2018
Path : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_easy
FS : 232.8 TiB Used FS: 18.1% Inodes: 0.0 Mi Used Inodes: -nan%
Options:
api : MPIIO
apiVersion : (3.0)
test filename : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_easy/ior_file_easy
access : file-per-process
type : independent
segments : 1
ordering in a file : sequential
ordering inter file : constant task offset
task offset : 1
tasks : 16
clients per node : 1
repetitions : 1
xfersize : 2 MiB
blocksize : 128 GiB
aggregate filesize : 2 TiB
Results:
access bw(MiB/s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---------- --------- -------- -------- -------- -------- ----
WARNING: Expected aggregate file size = 2199023255552.
WARNING: Stat() of aggregate file size = 1509446123520.
WARNING: Using actual aggregate bytes moved = 1509446123520.
read 4249 134217728 2048.00 0.007931 338.81 0.003203 338.82 0
Max Read: 4248.68 MiB/sec (4455.06 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
read 4248.68 4248.68 4248.68 0.00 2124.34 2124.34 2124.34 0.00 338.81586 0 16 1 1 1 1 1 0 0 1 137438953472 2097152 1439520.0 MPIIO 0
Finished : Mon Oct 22 11:15:53 2018
- ior_easy_write
-
[node0046.palmetto.clemson.edu:75318] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:29479] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:119922] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:06535] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:109465] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:44090] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:105552] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:111048] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:80964] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:111923] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:40262] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:51371] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:66855] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:17263] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:109522] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:38378] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
IOR-3.2.0: MPI Coordinated Test of Parallel I/O
Began : Mon Oct 22 10:27:56 2018
Command line : /home/jburto2/io-500-dev/bin/ior -w -C -Q 1 -g -G 27 -k -e -t 2m -b 131072m -F -a MPIIO -o /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_easy/ior_file_easy -O stoneWallingStatusFile=/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_easy/stonewall -O stoneWallingWearOut=1 -D 300
Machine : Linux node0046.palmetto.clemson.edu
TestID : 0
StartTime : Mon Oct 22 10:27:56 2018
Path : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_easy
FS : 232.8 TiB Used FS: 17.1% Inodes: 0.0 Mi Used Inodes: -nan%
Options:
api : MPIIO
apiVersion : (3.0)
test filename : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_easy/ior_file_easy
access : file-per-process
type : independent
segments : 1
ordering in a file : sequential
ordering inter file : constant task offset
task offset : 1
tasks : 16
clients per node : 1
repetitions : 1
xfersize : 2 MiB
blocksize : 128 GiB
aggregate filesize : 2 TiB
stonewallingTime : 300
stoneWallingWearOut : 1
Results:
access bw(MiB/s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---------- --------- -------- -------- -------- -------- ----
stonewalling pairs accessed min: 43884 max: 44985 -- min data: 85.7 GiB mean data: 86.3 GiB time: 300.0s
WARNING: Expected aggregate file size = 2199023255552.
WARNING: Stat() of aggregate file size = 1509446123520.
WARNING: Using actual aggregate bytes moved = 1509446123520.
WARNING: maybe caused by deadlineForStonewalling
write 4521 134217728 2048.00 0.004853 318.37 0.003590 318.38 0
Max Write: 4521.44 MiB/sec (4741.08 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
write 4521.44 4521.44 4521.44 0.00 2260.72 2260.72 2260.72 0.00 318.37616 0 16 1 1 1 1 1 0 0 1 137438953472 2097152 1439520.0 MPIIO 0
Finished : Mon Oct 22 10:33:14 2018
- ior_hard_read
-
[node0046.palmetto.clemson.edu:76474] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:110475] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:41255] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:30598] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:07606] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:45183] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:52561] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:18264] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:120919] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:112208] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:39382] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:110594] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:68012] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:112919] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:106582] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:81941] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
IOR-3.2.0: MPI Coordinated Test of Parallel I/O
Began : Mon Oct 22 11:19:21 2018
Command line : /home/jburto2/io-500-dev/bin/ior -r -R -C -Q 1 -g -G 27 -k -e -t 47008 -b 47008 -s 2000000 -a POSIX -o /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_hard/IOR_file -O stoneWallingStatusFile=/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_hard/stonewall
Machine : Linux node0046.palmetto.clemson.edu
TestID : 0
StartTime : Mon Oct 22 11:19:21 2018
Path : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_hard
FS : 232.8 TiB Used FS: 18.1% Inodes: 0.0 Mi Used Inodes: -nan%
Options:
api : POSIX
apiVersion :
test filename : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_hard/IOR_file
access : single-shared-file
type : independent
segments : 2000000
ordering in a file : sequential
ordering inter file : constant task offset
task offset : 1
tasks : 16
clients per node : 1
repetitions : 1
xfersize : 47008 bytes
blocksize : 47008 bytes
aggregate filesize : 1.37 TiB
Results:
access bw(MiB/s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---------- --------- -------- -------- -------- -------- ----
WARNING: Expected aggregate file size = 1504256000000.
WARNING: Stat() of aggregate file size = 966701844992.
WARNING: Using actual aggregate bytes moved = 966701844992.
read 507.88 45.91 45.91 0.005841 1815.21 0.009030 1815.22 0
Max Read: 507.88 MiB/sec (532.55 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
read 507.88 507.88 507.88 0.00 11329.03 11329.03 11329.03 0.00 1815.21559 0 16 1 1 0 1 1 0 0 2000000 47008 47008 921918.8 POSIX 0
Finished : Mon Oct 22 11:49:36 2018
- ior_hard_write
-
[node0139.palmetto.clemson.edu:06771] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:109700] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:40491] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:105812] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:17493] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:75576] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:29758] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:109780] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:44337] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:120154] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:67104] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:112155] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:51660] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:38611] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:111303] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:81190] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
IOR-3.2.0: MPI Coordinated Test of Parallel I/O
Began : Mon Oct 22 10:39:23 2018
Command line : /home/jburto2/io-500-dev/bin/ior -w -C -Q 1 -g -G 27 -k -e -t 47008 -b 47008 -s 2000000 -a POSIX -o /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_hard/IOR_file -O stoneWallingStatusFile=/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_hard/stonewall -O stoneWallingWearOut=1 -D 300
Machine : Linux node0046.palmetto.clemson.edu
TestID : 0
StartTime : Mon Oct 22 10:39:23 2018
Path : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_hard
FS : 232.8 TiB Used FS: 17.7% Inodes: 0.0 Mi Used Inodes: -nan%
Options:
api : POSIX
apiVersion :
test filename : /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/ior_hard/IOR_file
access : single-shared-file
type : independent
segments : 2000000
ordering in a file : sequential
ordering inter file : constant task offset
task offset : 1
tasks : 16
clients per node : 1
repetitions : 1
xfersize : 47008 bytes
blocksize : 47008 bytes
aggregate filesize : 1.37 TiB
stonewallingTime : 300
stoneWallingWearOut : 1
Results:
access bw(MiB/s) block(KiB) xfer(KiB) open(s) wr/rd(s) close(s) total(s) iter
------ --------- ---------- --------- -------- -------- -------- -------- ----
stonewalling pairs accessed min: 1285279 max: 1285289 -- min data: 56.3 GiB mean data: 56.3 GiB time: 300.0s
WARNING: Expected aggregate file size = 1504256000000.
WARNING: Stat() of aggregate file size = 966701844992.
WARNING: Using actual aggregate bytes moved = 966701844992.
WARNING: maybe caused by deadlineForStonewalling
write 2861.97 45.91 45.91 0.005942 322.12 0.005457 322.13 0
Max Write: 2861.97 MiB/sec (3000.99 MB/sec)
Summary of all tests:
Operation Max(MiB) Min(MiB) Mean(MiB) StdDev Max(OPs) Min(OPs) Mean(OPs) StdDev Mean(s) Test# #Tasks tPN reps fPP reord reordoff reordrand seed segcnt blksiz xsize aggs(MiB) API RefNum
write 2861.97 2861.97 2861.97 0.00 63840.08 63840.08 63840.08 0.00 322.12716 0 16 1 1 0 1 1 0 0 2000000 47008 47008 921918.8 POSIX 0
Finished : Mon Oct 22 10:44:45 2018
- mdtest_easy_delete
-
[node0175.palmetto.clemson.edu:53283] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:121587] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:77164] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:111143] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:08278] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:41920] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:31343] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:68734] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:112929] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:40056] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:107248] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:18935] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:45904] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:111252] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:113591] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:82603] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 11:50:12 --
mdtest-1.9.3 was launched with 16 total task(s) on 16 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-r" "-F" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_easy" "-n" "800000" "-u" "-L" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_easy-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54
FS: 232.8 TiB Used FS: 18.1% Inodes: 0.0 Mi Used Inodes: -nan%
16 tasks, 12800000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 25418.795 25418.795 25418.795 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 0.331 0.331 0.331 0.000
-- finished at 10/22/2018 11:54:20 --
- mdtest_easy_stat
-
[node0046.palmetto.clemson.edu:76450] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:52473] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:110460] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:120906] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:41240] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:07589] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:30571] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:106567] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:18249] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:39367] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:112903] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:45164] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:112187] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:110581] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:67989] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:81928] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 11:16:19 --
mdtest-1.9.3 was launched with 16 total task(s) on 16 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-T" "-F" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_easy" "-n" "800000" "-u" "-L" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_easy-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54
FS: 232.8 TiB Used FS: 18.1% Inodes: 0.0 Mi Used Inodes: -nan%
16 tasks, 12800000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 34506.485 34506.485 34506.485 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 11:19:19 --
- mdtest_easy_write
-
[node0121.palmetto.clemson.edu:109654] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:75521] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:06727] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:51600] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:38565] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:112109] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:105770] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:67051] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:40447] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:111251] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:120108] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:109739] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:29706] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:17449] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:44286] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:81151] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 10:33:31 --
mdtest-1.9.3 was launched with 16 total task(s) on 16 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-C" "-F" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_easy" "-n" "800000" "-u" "-L" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_easy-stonewall" "-W" "300"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54
FS: 232.8 TiB Used FS: 17.7% Inodes: 0.0 Mi Used Inodes: -nan%
16 tasks, 12800000 files
Continue stonewall hit min: 349202 max: 388556 avg: 368119.6
stonewall rank 0: 376686 of 388556
stonewall rank 4: 349202 of 388556
stonewall rank 2: 376458 of 388556
stonewall rank 1: 360848 of 388556
stonewall rank 8: 359054 of 388556
stonewall rank 12: 353845 of 388556
stonewall rank 10: 361793 of 388556
stonewall rank 3: 374092 of 388556
stonewall rank 14: 352036 of 388556
stonewall rank 5: 376501 of 388556
stonewall rank 7: 373470 of 388556
stonewall rank 9: 379709 of 388556
stonewall rank 13: 374292 of 388556
stonewall rank 15: 373472 of 388556
stonewall rank 11: 359900 of 388556
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 38139.399 38139.399 38139.399 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 98.443 98.443 98.443 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 10:39:06 --
- mdtest_hard_delete
-
[node0046.palmetto.clemson.edu:77246] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:08344] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:45989] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:31381] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:111209] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:107276] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:68807] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:19000] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:121649] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:111277] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:53322] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:41982] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:40119] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:113002] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:113657] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:82661] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 11:56:33 --
mdtest-1.9.3 was launched with 16 total task(s) on 16 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-r" "-t" "-F" "-w" "3901" "-e" "3901" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_hard" "-n" "150000" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_hard-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54
FS: 232.8 TiB Used FS: 18.1% Inodes: 0.0 Mi Used Inodes: -nan%
16 tasks, 2400000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 5482.547 5482.547 5482.547 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 1.136 1.136 1.136 0.000
-- finished at 10/22/2018 11:59:15 --
- mdtest_hard_read
-
[node0046.palmetto.clemson.edu:77189] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:53306] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:08293] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:121601] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:40069] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0121.palmetto.clemson.edu:111158] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:107261] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:68758] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:113607] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:112953] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:31365] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:41934] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:111265] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:18951] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:45929] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:82616] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 11:54:22 --
mdtest-1.9.3 was launched with 16 total task(s) on 16 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-E" "-t" "-F" "-w" "3901" "-e" "3901" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_hard" "-n" "150000" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_hard-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54
FS: 232.8 TiB Used FS: 18.1% Inodes: 0.0 Mi Used Inodes: -nan%
16 tasks, 2400000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 6804.888 6804.888 6804.888 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 11:56:32 --
- mdtest_hard_stat
-
[node0121.palmetto.clemson.edu:110996] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:31197] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:08129] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:68588] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:77011] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:39911] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:45756] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:53137] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:107102] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:121443] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:111111] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:112788] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:82461] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:113446] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:41777] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:18789] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 11:49:40 --
mdtest-1.9.3 was launched with 16 total task(s) on 16 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-T" "-t" "-F" "-w" "3901" "-e" "3901" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_hard" "-n" "150000" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_hard-stonewall"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54
FS: 232.8 TiB Used FS: 18.1% Inodes: 0.0 Mi Used Inodes: -nan%
16 tasks, 2400000 files
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 0.000 0.000 0.000 0.000
File stat : 28970.584 28970.584 28970.584 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 0.000 0.000 0.000 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 11:50:11 --
- mdtest_hard_write
-
[node0121.palmetto.clemson.edu:109882] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0046.palmetto.clemson.edu:75772] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1808.palmetto.clemson.edu:120335] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0139.palmetto.clemson.edu:06952] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0200.palmetto.clemson.edu:29948] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0175.palmetto.clemson.edu:51848] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0145.palmetto.clemson.edu:44526] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1832.palmetto.clemson.edu:17673] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1810.palmetto.clemson.edu:105960] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1881.palmetto.clemson.edu:40670] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1811.palmetto.clemson.edu:109924] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1805.palmetto.clemson.edu:67359] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node0653.palmetto.clemson.edu:81366] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1882.palmetto.clemson.edu:38793] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1883.palmetto.clemson.edu:111495] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
[node1806.palmetto.clemson.edu:112333] mca: base: component_find: unable to open /software/openmpi/1.10.7_gcc/lib/openmpi/mca_btl_openib: libibverbs.so.1: cannot open shared object file: No such file or directory (ignored)
-- started at 10/22/2018 10:45:05 --
mdtest-1.9.3 was launched with 16 total task(s) on 16 node(s)
Command line used: /home/jburto2/io-500-dev/bin/mdtest "-C" "-t" "-F" "-w" "3901" "-e" "3901" "-d" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_hard" "-n" "150000" "-x" "/scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54/mdt_hard-stonewall" "-W" "300"
Path: /scratch1b/jburto2/io500/datafiles/io500.2018.10.22-10.27.54
FS: 232.8 TiB Used FS: 18.1% Inodes: 0.0 Mi Used Inodes: -nan%
16 tasks, 2400000 files
stonewall rank 1: 54954 of 55220
Continue stonewall hit min: 54786 max: 55220 avg: 55066.7
stonewall rank 0: 55122 of 55220
stonewall rank 2: 55060 of 55220
stonewall rank 4: 54914 of 55220
stonewall rank 9: 55158 of 55220
stonewall rank 6: 55105 of 55220
stonewall rank 5: 55137 of 55220
stonewall rank 10: 54970 of 55220
stonewall rank 3: 55127 of 55220
stonewall rank 11: 55185 of 55220
stonewall rank 8: 54940 of 55220
stonewall rank 7: 54786 of 55220
stonewall rank 13: 55164 of 55220
stonewall rank 15: 55138 of 55220
stonewall rank 14: 55087 of 55220
SUMMARY rate: (of 1 iterations)
Operation Max Min Mean Std Dev
--------- --- --- ---- -------
File creation : 7967.583 7967.583 7967.583 0.000
File stat : 0.000 0.000 0.000 0.000
File read : 0.000 0.000 0.000 0.000
File removal : 0.000 0.000 0.000 0.000
Tree creation : 171.712 171.712 171.712 0.000
Tree removal : 0.000 0.000 0.000 0.000
-- finished at 10/22/2018 10:50:06 --
- result_summary
-
[RESULT] BW phase 1 ior_easy_write 4.415 GB/s : time 318.38 seconds
[RESULT] IOPS phase 1 mdtest_easy_write 38.139 kiops : time 352.35 seconds
[RESULT] BW phase 2 ior_hard_write 2.795 GB/s : time 322.13 seconds
[RESULT] IOPS phase 2 mdtest_hard_write 7.968 kiops : time 320.71 seconds
[RESULT] IOPS phase 3 find 5.880 kiops : time 1206.25 seconds
[RESULT] BW phase 3 ior_easy_read 4.149 GB/s : time 338.82 seconds
[RESULT] IOPS phase 4 mdtest_easy_stat 34.506 kiops : time 202.96 seconds
[RESULT] BW phase 4 ior_hard_read 0.496 GB/s : time 1815.22 seconds
[RESULT] IOPS phase 5 mdtest_hard_stat 28.971 kiops : time 35.04 seconds
[RESULT] IOPS phase 6 mdtest_easy_delete 25.419 kiops : time 249.10 seconds
[RESULT] IOPS phase 7 mdtest_hard_read 6.805 kiops : time 131.58 seconds
[RESULT] IOPS phase 8 mdtest_hard_delete 5.483 kiops : time 163.77 seconds
[SCORE] Bandwidth 2.24485 GB/s : IOPS 14.2433 kiops : TOTAL 5.65456